This is a eDNA report of all the analysis performed for the SubBioMon program. All the sampling were performed using Sylphium filter and by amplifying both the CO1 and the 28S marker. The amplification were then sequenced using Nanopore sequencing and clusterized using the Natrix2 pipeline using an identity treshold of 97% and minimum Q score of 7. The OTUs were then blast over the NCBI database
Note that this Krona plot has been made withe the best blast identity
possible. Some of the OTUs did not have good blast using NCBI database.
For species presence absence refers to the “species presence” tab
CO1
Detected species has been calculated by removing every OTU that had less than 90 query coverage and less than 99% pident. The pident treshold has been chosen following Egeter et al. 2022. The coverage treshold has been chosen arbitrarly
CO1
CO1
Note that this Krona plot has been made withe the best blast identity
possible. Some of the OTUs did not have good blast using NCBI database.
For species presence absence refers to the “species presence” tab
CO1
Detected species has been calculated by removing every OTU that had
less than 90 query coverage and less than 99% pident. The pident
treshold has been chosen following Egeter et al. 2022. The coverage
treshold has been chosen arbitrarly
CO1